Appendix A.docx

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Biosequence Search
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ACQ-27-0065
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Appendix C.docx DOCX document
RFI Attachment 3 - Question and Answer Sheet.xlsx XLSX spreadsheet
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Appendix D.docx DOCX document
ACQ-27-0065 - RFI Biosequence Tool.pdf PDF
Appendix B.docx DOCX document
RFI Attachment 2 - Biosequence Search SOO.pdf PDF

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Date: May 1, 2026 Appendix A. USPTO Systems, Workflow Tools, and Searchable Data Sources Table A-1. USPTO software and workflow tools

Name
Function
PE2E-DAV
Document viewer for the application file and posted search results
SLIC
Sequence Listing Control system used to review sequence-listing versions and certification status
ABSS
USPTO internal biological sequence-search system
STIC-EIC 1600 Sequence Search Request Form
Internal request mechanism for customized sequence searches
STIC Workflow Tracker (SWFT)
Internal status tracker for search requests submitted to STIC-EIC 1600
GenBase UI
Interface used for advanced review and navigation of ABSS search results
ABSS sequence-to-sequence alignment tool
Tool for direct local alignment of two sequences
S3C (Sequence Systems Service Center)
Technical support resource for sequence-listing issues

Table A-2. Sequence databases searchable through ABSS

Database or database group
General purpose
Pending_Patents_NA_Main and Pending_Patents_NA_New
Nucleotide sequences from pending patent applications
Pending_Patents_AA_Main and Pending_Patents_AA_New
Amino acid sequences from pending patent applications
Published_Applications_NA_Main and Published_Applications_NA_New
Nucleotide sequences from published patent applications
Published_Applications_AA_Main and Published_Applications_AA_New
Amino acid sequences from published patent applications
Issued_Patents_NA
Nucleotide sequences from issued patents
Issued_Patents_AA
Amino acid sequences from issued patents
Geneseq_NA and Geneseq_AA
Subscription-based patent-sequence data
GenEmbl
Broad public nucleotide-sequence data
EST
Expressed sequence tag data
UniProt
Protein sequence data
PIR
Protein sequence data

Table A-3. External resource used in limited circumstances

Name
Limitation
NCBI BLAST
External resource; may be used only for published sequence content

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