Single-cell mapping center for human regulatory elements and gene activity

Active Cooperative Agreement Awarded Last action

Award ID
UM1HG012076
Recipient
Awarding agency
Obligated
$16,300,249

Award facts

Assistance listing
93.172 Human Genome Research
Completion date 90% complete
Originally
Place of performance
Palo Alto, CA 94305, USA

Award details come from USAspending.gov.

Description

As the agency reported it.

Abstract
A comprehensive genome-wide map of DNA regulatory elements and gene expression in human cells is of critical importance for understanding how genomic variation impacts human health and disease. Since regulatory DNA elements are exceptionally cell type-, tissue-, and disease state-specific, a comprehensive catalog of these elements has been difficult to achieve. The overall mission of this igvf mapping center is to create a high- quality, open-access, and single cell-resolution reference map of human regulatory elements and gene expression in immune cells during human development, across organ systems in healthy adults, and in tissues from diverse immune-related diseases. Our mapping center will leverage: (I) our recent advances in developing scalable and cost-efficient single-cell epigenome and multi-omic technologies to simultaneously map open chromatin sites, gene expression, intracellular and cell surface proteins, and clonal lineage tracing in each tissue sample, (II) our prior technical improvements and application of these methods to primary tissues from humans, and (III) our pre-existing human tissue biobank consisting of samples from more than 500 human individuals, 20 organ systems, and 15 disease conditions, consented for unrestricted access, genomic sequencing, and data sharing. In specific aim 1, we will work closely with the igvf consortium to establish cross-center plans for data generation, analyses, and effective coordination of sample access and sharing. In specific aim 2, we will generate a single-cell multi-omic atlas of immune cell types (and non-immune cells types, as determined with the igvf) during development in early life, healthy aging, and across human organ systems. In specific aim 3, we will generate a single-cell multi-omic atlas in immune cell types from primary tissues in patients with autoimmunity, cancer, neurodegenerative disease, and infection. In specific aim 4, we will analyze regulatory sites and gene expression in the context of clonal differentiation trajectories inferred from mitochondrial lineage tracing and develop and maintain an integrated reference map of each datatype and tissue sample for the research community. Our mapping center, composed of 7 new investigators with extensive experience in single- cell genomic technologies and human disease analysis, will work closely with the igvf to share technologies, resources, data, and tissue samples towards the shared goal of developing a comprehensive single-cell atlas of cell types, functional regulatory elements, and gene expression in humans.

Transactions

Action Obligated Date
Amendment $2,264,168
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Amendment $2,515,744
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Amendment $2,515,742
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Original award $1,354,685
Show all 17

Subawards

Subrecipient Amount Awarded
J.david Gladstone Institutes Purpose of the work to be performed by subcontractor. The subcontractor, Ryan Corces, PhD, is an Assistant Investigator at the Gladstone Institutes. Dr.… $632,315
J.david Gladstone Institutes $509,287
The Regents Of The University Of California. San Francisco "UCSF will participate in all aspects of the Mapping Center, and co-lead the Working Group focused on tissue procurement and processing. Dr. Gardner will be the… $137,015
The Regents Of The University Of California. San Francisco "UCSF will participate in all aspects of the Mapping Center, and co-lead the Working Group focused on tissue procurement and processing. Dr. Gardner will be the… $360,539
J.david Gladstone Institutes Purpose of the work to be performed by subcontractor. The subcontractor, Ryan Corces, PhD, is an Assistant Investigator at the Gladstone Institutes. Dr.… $10,000
Charité - Universitätsmedizin Berlin data of 250 post-surgical oropharyngeal cancer patients for the validation of apredictive model.5) Washington University in St. Louis has the patient data,… $141,268
The Regents Of The University Of California. San Francisco "UCSF will participate in all aspects of the Mapping Center, and co-lead the Working Group focused on tissue procurement and processing. Dr. Gardner will be the… $137,015
J.david Gladstone Institutes Purpose of the work to be performed by subcontractor. The subcontractor, Ryan Corces, PhD, is an Assistant Investigator at the Gladstone Institutes. Dr.… $509,287
The Regents Of The University Of California. San Francisco "UCSF will participate in all aspects of the Mapping Center, and co-lead the Working Group focused on tissue procurement and processing. Dr. Gardner will be the… $360,540

Quick answers

Who received award UM1HG012076?

UM1HG012076 was awarded to The Leland Stanford Junior University by National Human Genome Research Institute (National Institutes of Health) on August 31, 2021.

How much is award UM1HG012076 worth?

$16,300,249 has been obligated on UM1HG012076.

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