Statement of Work 2024 11 14.pdf

STATEMENT OF WORK

INDEFINITE DELIVERY, INDEFINITE QUANTITY

CONTRACT FOR ILLUMINA EQUIPMENT AND

SERVICES

BACKGROUND

The United States Department of Agriculture (USDA), Agriculture Research Services (ARS) is seeking a contract vehicle to be utilized by all USDA agencies to procure scientific equipment, reagents, supplies, and support plans for instrumentation to perform sequencing-by-synthesis based high-throughput sequencing on Illumina sequencing platforms.

SCOPE

The USDA has a requirement for:

1. iSeq, MiSeq, NextSeq, and NovaSeq classes of sequencing platforms, support, supplies, and reagents necessary for preparing and performing samples for sequence by synthesis runs,

2. Infinium assays reagents, iScan instruments used to scan iSelect BeadChip arrays for SNP genotyping, including peripheral equipment, corresponding analysis software, and support agreements, and

3. Support plans for existing Illumina platforms and equipment.

The attached product list represents the scope of equipment, supplies, and associated products to be covered by this contract.

Retired/Updated Equipment: In the event that products listed on the attachment are retired or updated, the IDIQ shall be modified to incorporate these changes.

The IDIQ shall be updated Quarterly to incorporate the updated Price Lists.

Quarterly Report

The contractor shall retain the order history of all purchasers and purchases and provide a quarterly report to the Contracting Officer (KO) and Contracting Officer Representative (COR) responsible for each individual Delivery Order as well as the COR responsible for the IDIQ. The contractor shall provide all reports via 508 compliant electronic submission, and/or in paper form.

The report shall include the following information:

• Name of Purchaser

• Name of USDA Agency or Non-USDA Agency

• Task/Delivery Order Number (e.g. 12XXXXXXXXXXX)

• Date of Order Placement

• Brief description of items purchased

• Individual item cost

• Total cost

• Destination

PERIOD OF PERFORMANCE

The contract ordering period will be five years tentatively, 5/26/2025 – 5/25/2030.

Exact dates will be determined at time of contract award.

DELIVERY REQUIREMENTS

Delivery requirements, such as place of delivery and time of delivery are to be determined and/or negotiated with the ordering activity at time of IDIQ order placement.

AUTHORIZED USERS

Any authorized USDA Contracting Officer, purchasing agent, or purchase card holder may utilize this IDIQ within their ordering limitation. Agencies outside the USDA may utilize the IDIQ but will need to get permission from the IDIQ Contracting Officer before a solicitation to the Contractor can be sent.

Price Validity Date : Oct 25, 2024

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20005132 Infinium® Global Screening Array-24 v1.0 Kit (48 samples)

20005133 Infinium® Global Screening Array-24 v1.0 Kit (288 samples)

20068339 Infinium Global Clinical Research Array with Enhanced PGx-24 v1.0 Kit(96 samples)

20005134 Infinium® Global Screening Array-24 v1.0 Kit (1152 samples)

20024444 Infinium Global Screening Array-24 v2.0 Kit (48 samples)

20024540 Infinium HTSE Global Screening Array-24 v2.0 (4,608 Samples)

20024541 Infinium HTSE Global Screening Array-24 v2.0 (23,040 Samples)

20076132 Infinium Global Diversity Array with Carrier Screening andPharmacogenomics-8 v2.0 Kit (48 Samples)

20076134 Infinium Global Diversity Array with Carrier Screening andPharmacogenomics-8 v2.0 Kit (384 Samples)

20090686 Infinium Global Diversity Array with Polygenic Risk Score Content v1.0(384 samples)

20090685 Infinium Global Diversity Array with Polygenic Risk Score Content v1.0(96 samples)

20090684 Infinium Global Diversity Array with Polygenic Risk Score Content v1.0(48 samples)

20090683 Infinium Global Diversity Array with Polygenic Risk Score Content v1.0(16 samples)

20031810 Infinium Global Diversity Array-8 v1.0 Kit (48 Samples)

20031811 Infinium Global Diversity Array-8 v1.0 Kit (96 samples)

20031812 Infinium Global Diversity Array-8 v1.0 Kit (384 Samples)

20034150 Infinium HTSE Global Screening Array-24 v3.0(4,608 Samples)

20034151 Infinium HTSE Global Screening Array-24 v3.0(23,040 Samples)

20031669 Infinium Global Diversity Array-8 v1.0 Kit (16 samples)

20030772 Infinium Global Screening Array-24 v3.0 Kit (1152 Samples)

20030771 Infinium Global Screening Array-24 v3.0 Kit (288 Samples)

20030770 Infinium Global Screening Array-24 v3.0 Kit (48 Samples)

20021670 Infinium HTS Extra Global Screening Array-24 v1.0 (4,608 samples)

20048859 Illumina MicroArray Analytics – PGx Analysis with Interpretation Report

20024446 Infinium Global Screening Array-24 v2.0 Kit (1152 samples)

20068347 Infinium Global Screening Array with Enhanced PGx-48 v4.0 Kit (1152samples)

Gold Service Contract

20086737 NovaSeq X Gold Support Plan

20020001 HiSeq 4000 Gold Support Plan

20020009 NextSeq 500 Gold Support Plan

20020000 HiSeq 3000 Gold Support Plan

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20019999 HiSeq 2500 Gold Support Plan

20020010 NextSeq 550 Gold Support Plan

20020011 NovaSeq 6000 Gold Support Plan

20020130 iScan Warranty Upgrade: Gold Support Plan

20020131 MiniSeq Warranty Upgrade: Gold Support Plan

20020132 MiSeq Warranty Upgrade: Gold Support Plan

20020134 MiSeq Dx Warranty Upgrade: Gold Support Plan

20020135 NextSeq 500 Warranty Upgrade: Gold Support Plan

20020136 NextSeq 550 Warranty Upgrade: Gold Support Plan

20020137 NovaSeq 6000 Warranty Upgrade: Gold Support Plan

20047221 NovaSeq 6000Dx-CN Warranty Upgrade: Gold Support Plan

20019998 HiSeq 2000 Gold Support Plan

20086753 NovaSeq X Plus Gold Support Plan

20019997 HiSeq 1500 Gold Support Plan

20086755 NovaSeq X Plus Warranty Upgrade: Gold Support Plan

20019996 HiSeq 1000 Gold Support Plan

20019993 cBot2 Gold Support Plan

20020008 MiSeq Dx Gold Support Plan

20072462 NovaSeq 6000Dx Warranty Upgrade: Gold Support Plan

20047149 NovaSeq 6000Dx-CN Gold Support Plan

20019992 cBot Gold Support Plan

20072460 NovaSeq 6000Dx Gold Support Plan

20040645 NextSeq 1000 Gold Support Plan

20040649 NextSeq 1000 Warranty Upgrade: Gold Support Plan

20040664 NextSeq 2000 Gold Support Plan

20040668 NextSeq 2000 Warranty Upgrade: Gold

20089635 iScanDx Warranty Upgrade: Gold Support Plan

20089633 iScanDx Gold Support Plan

20132548 MiSeq i100 Plus Gold Support Plan

20132550 MiSeq i100 Plus Warranty Upgrade: Gold Support Plan

SV-122-1004 Illumina® Product Care RoMa 2 Preventative Maintenance Plan

SV-121-1004 Illumina® Product Care LiHa 2 Preventative Maintenance Plan

20024565 NextSeq 550Dx Gold Support Plan

20024964 NextSeq 550Dx Warranty Upgrade: Gold Support Plan

20020004 iScan Gold Support Plan

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20040532 Illumina® Stranded mRNA Prep, Ligation (16 Samples)

20040534 Illumina® Stranded mRNA Prep, Ligation (96 Samples)

20040540 Illumina RNA Fast Hyb Enrichment (16 Samples)

20040541 Illumina® RNA Fast Hyb Enrichment (96 Samples)

20040542 Illumina RNA Prep, (L) Tagmentation (16 Samples)

20040537 Illumina® RNA Prep with Enrichment, (L) Tagmentation (96 Samples)

20040536 Illumina® RNA Prep with Enrichment, (L) Tagmentation (16 Samples)

20113837 Illumina Human Comprehensive Panel (96 samples)

20113836 Illumina Human Comprehensive Panel (24 samples)

20113835 Illumina Complete Long Read Prep with Enrichment, Human ComprehensivePanel (96 samples)

20113834 Illumina Complete Long Read Prep with Enrichment, Human ComprehensivePanel (24 samples)

20113833 Illumina Complete Long Read Prep with Enrichment, Human (96 samples)

20113832 Illumina Complete Long Read Prep with Enrichment, Human (24 samples)

20040543 Illumina® RNA Prep, (L) Tagmentation (96 Samples)

20119944 Illumina Purification Beads 30 ml

20040553 IDT® for Illumina® RNA UD Indexes Set A, Ligation (96 Indexes, 96Samples)

20040554 IDT® for Illumina® RNA UD Indexes Set B, Ligation (96 Indexes, 96Samples)

20040555 IDT® for Illumina® RNA UD Indexes Set C, Ligation (96 Indexes, 96Samples)

20072063 Illumina® Stranded Total RNA Prep with Ligation, Ribo-Zero PlusMicrobiome (96 Samples)

20040556 IDT® for Illumina® RNA UD Indexes Set D, Ligation (96 Indexes, 96Samples)

20126235 Illumina UMI DNA/RNA UD v3 indexes Set A, Ligation (96 indexes, 96Samples)

20126237 Illumina UMI DNA/RNA UD v3 indexes Set B, Ligation (96 indexes, 96Samples)

20041715 Illumina DNA PCR-Free Box 1 Purification Beads and Buffers 24

20041716 Illumina DNA PCR-Free Box 1 Purification Beads and Buffers 96

20041794 Illumina® DNA PCR-Free Prep, Tagmentation (24 Samples)

20041795 Illumina® DNA PCR-Free Prep, Tagmentation (96 Samples)

20041855 Illumina DNA PCR-Free Box 2 Tagmentation Beads and Buffers

20041858 Illumina DNA PCR-Free Box 2 Tagmentation Beads and Buffers

20042666 IDT® for Illumina® DNA/RNA UD Indexes Set C, Tagmentation (96 Indexes,96 Samples)

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20038997 TruSight Sample Prep System

20038898 NextSeq 1000 Sequencing System

20038897 NextSeq 2000 Sequencing System

20037144 iScan PC Upgrade and Windows 10 SSD Upgrade Kit

20037138 Certified Pre-Owned NextSeq 550 System

20043856 Infinium Automated Pipetting System (Tecan) PC Upgrade (Windows 10A8202)

20051293 Infinium Automated Pipetting System with ILASS

SY-101-1001 iScan System (110/220V)

20112098 NextSeq™ 1000-CN Sequencing System

20011101 Infinium® XT Upgrade Kit (24 Beadchips)

20005715 NextSeq™ 550Dx Sequencing System

20068232 NovaSeq 6000Dx Sequencer Instrument

20064466 Infinium Amplification System

20045369 NovaSeq 6000Dx-CN

SY-415-1001 NextSeq 500 Sequencing System

SY-415-1002 NextSeq 550 Sequencing System

20021532 iSeq 100 System

20101887 ASSY, NEXTSEQ 2000 CIX MODULE_TP

20012850 NovaSeq 6000 Sequencing System

20081310 Infinium Automated Pipetting System Upgrade

20081314 iScan™ Dx System

20063021 NovaSeq 6000Dx-CN-3D

20102459 NextSeq™ 2000-CN Sequencing System

20102513 ASSY, INSTRUMENT, MISEQ I100 PLUS

20015526 Infinium XT ST Upgrade Kit (Up to 12 BeadChip Batches)

20115695 MiSeq i100 Plus System

20116818 Illumina Protein Prep Automation System

SY-410-1003 MiSeq System

DX-410-1001 MiSeqDx™ System

20089929 NovaSeq™ 6000 RUO Certified Pre-Owned

20084804 NovaSeq X Plus Sequencing System

20084803 NovaSeq X Sequencing System

20086721 ASSY, NEXTSEQ 2000 CIX MODULE_TP_YG

20014053 MiSeqDx System (China)

SY-202-1002 AutoLoader 2.x, Dual-Scanner Configuration (110/220 V)

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20090311 Urinary Pathogen ID/AMR Enrichment Kit Set D (RUO) (96 indexes, 96samples)

20123098 TruSight Hereditary Cancer Enrichment Panel plus Correlation Enginesoftware

20047052 Respiratory Pathogen ID/AMR Enrichment Kit Set D (RUO) (96 indexes, 96Samples)

20093180 Twist Bioscience for Illumina Mitochondrial Panel

20047051 Respiratory Pathogen ID/AMR Enrichment Kit Set C (RUO) (96 indexes, 96Samples)

20123100 TruSight® PanCancer Oligo Panel plus Correlation Engine software

20077595 Illumina DNA Prep with Exome 2.5 Enrichment, (S) Tagmentation Set B (96Samples, 12-plex)

FC-140-1101 TruSight Rapid Capture (1 index, 8 samples, 8 enrichments)

FC-140-1102 TruSight Rapid Capture (2 indexes, 8 samples, 4 enrichments)

FC-140-1103 TruSight Rapid Capture (4 indexes, 16 samples, 4 enrichments)

OP-101-1004 TruSight Tumor 170 Kit (24 Samples)

FC-140-1104 TruSight Rapid Capture (24 indexes, 48 samples, 4 enrichments)

FC-140-1105 TruSight Rapid Capture (24 indexes, 96 samples, 8 enrichments)

FC-140-1106 TruSight Rapid Capture (96 indexes, 288 samples, 24 enrichments)

20100469 Illlumina Respiratory Virus Enrichment Kit Set A (96 indexes, 96samples)

20112359 Viral Surveillance panel (VSP) Index Set A with MiSeq core cons, andsoftware analysis included, 96 samples

20112358 Respiratory Pathogen ID/AMR panel (RPIP) Index Set A with MiSeq corecons, and software analysis included, 96 samples

20112362 Respiratory Pathogen ID/AMR panel (RPIP) Index Set A withNextSeq1000/2000 core cons, and software analysis included, 96 samples

20100470 Illumina Respiratory Virus Enrichment Kit Set B (96 indexes, 96 samples)

20112363 Viral Surveillance panel (VSP) Index Set A with

NextSeq1000/2000 corecons, and software analysis included, 96 samples

20100471 Illumina Respiratory Virus Enrichment Kit Set C (96 indexes, 96 samples)

20011891 Canadian Consortia inherited Cancer

20100472 Illumina Respiratory Virus Enrichment Kit Set D (96 indexes, 96 samples)

20076914 Twist Bioscience® for Illumina Exome 2.5 Panel (8 Reactions) Kit

20123101 TruSight® RNA Fusion Oligo Panel plus Correlation Engine software

20123403 Illumina Viral Surveillance Panel v2 (96 samples)

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20120936 Ready Workflow for TSO 500 HT Enablement - Customer Site

20026291 MiSeq Training - Illumina Solutions Center

20025857 Introduction to Next Generation Sequencing: RNA - Illumina SolutionsCenter

20024929 iSeq Training - Illumina Solutions Center

20044860 COVIDSeq Training (EUA) - Customer Site

20045347 TSO 500 ctDNA Training – Customer Site

20066472 TSO Comprehensive Enablement Services

20125527 Ready Workflow - Project Services

20005637 MiniSeq System Training- Customer Site

20073774 Emedgene - Training at Customer site

20073775 Emedgene - Training at Illumina Solutions Center

20040675 NextSeq 2000 Sequencing System Training - Customer Site

20023816 NextSeq 550Dx System training - Customer site

TR-203-0002 TruSeq® RNA Sample Preparation

20023393 AmpliSeq™ for Illumina® RNA Library Preparation Kit Training

20023392 AmpliSeq™ for Illumina® DNA Library Preparation Kit Training

TR-203-0005 Library Validation and Quality Control

20046010 Illumina DNA PCR-Free Prep-Customer Site

20022900 Illumina DNA Prep - Customer Site

TR-401-0001 Field Delivered Applications Training

20022383 Introduction to Next Generation Sequencing: DNA - Illumina SolutionsCenter

20122119 Illumina Cell-Free DNA Prep with Enrichment Training - Customer site

SP-404-1008 VeriSeq™ NIPT Solution Enablement - RUO

20003925 TruSeq Small RNA Training-Customer Site

20003928 MiSeq Sequencing System Training - Customer Site

20003929 NextSeq 500/550 Sequencing System Training - Customer Site

20028457 Illumina DNA Prep Enrichment-Customer Site

20060633 Intro to NGS: Pathology-ISC

20060634 Intro to NGS: Microbiologists-ISC

20040656 NextSeq 1000 Sequencing System Training - Customer Site

20027039 Solutions Centre Delivered Applications Training - Daily

20004157 Informatics additional training – hourly

20027038 Solutions Centre Delivered Applications Training - Hourly

20109349 Pillar Library Preparation Kit Training - Customer Site

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

Qualification Services

SP-102-1001 HiSeq® 1000 Installation Qualification

SP-103-1002 MiSeq Operational Qualification

20089640 iScanDx Installation and Operational Qualification

SP-104-1003 NextSeq 500 PQ

SP-103-1006 MiSeq Installation and Operational Qualification

SP-102-4006 HiSeq® 4000 Installation and Operational Qualification

SP-102-3006 HiSeq® 3000 Installation and Operational Qualification

SP-102-2506 HiSeq® 2500 Installation and Operational Qualification

SP-102-1106 HiSeq X™ Installation and Operational Qualification

SP-101-1006 cBot™ Installation and Operational Qualification

SP-104-1006 NextSeq® 500 Installation and Operational Qualification

SP-301-1006 iScan® Installation and Operational Qualification

SP-503-1006 MiSeqDx® Installation and Operational Qualification

SP-102-3003 HiSeq® 3000 Performance Qualification

SP-102-4003 HiSeq® 4000 Performance Qualification

SP-102-3002 HiSeq 3000 Operational Qualification

SP-503-1005 Illumina® Product Care MiSeqDx™ System Health Check

SP-503-1004 Illumina® Product Care MiSeqDx™ Preventative Maintenance

SP-301-1005 Illumina® Product Care iScan® System Health Check

SP-301-1004 Illumina® Product Care iScan® Preventative Maintenance

SP-104-1005 Illumina® Product Care NextSeq® 500 System Health Check

SP-104-1004 Illumina® Product Care NextSeq® 500 Preventative Maintenance

SP-103-1005 Illumina® Product Care MiSeq® System Health Check

SP-103-1004 Illumina® Product Care MiSeq® Preventative Maintenance

SP-102-1105 Illumina® Product Care HiSeq X™ System Health Check

SP-102-1104 Illumina® Product Care HiSeq X™ Preventative Maintenance

SP-102-2505 Illumina® Product Care HiSeq® 2000/2500 System Health Check

SP-102-2504 Illumina® Product Care HiSeq® 2000/2500 Preventative Maintenance

SP-102-1505 Illumina® Product Care HiSeq® 1000/1500 System Health Check

SP-102-1504 Illumina® Product Care HiSeq® 1000/1500 Preventative Maintenance

SP-101-1005 Illumina® Product Care cBot™ System Health Check

SP-101-1004 Illumina® Product Care cBot™ Preventative Maintenance

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

SP-102-4002 HiSeq 4000 Operational Qualification

SP-102-1002 HiSeq® 1000 Operational Qualification

SP-102-1103 HiSeq X™ Performance Qualification

SP-102-1102 HiSeq X™ Operational Qualification

SP-104-5505 Illumina® Product Care NextSeq 550 System Health Check

SP-101-2004 Illumina® Product Care cBot™ 2 Preventative Maintenance

SP-101-2005 Illumina® Product Care cBot™ 2 System Health Check

SP-101-2006 cBot™ 2 Installation and Operational Qualification

SV-161-1014 HiSeq® 3000 OQ Coverage Add-On

SV-161-1016 cBot™ 2 OQ Coverage Add-On

SV-161-1015 HiSeq® 4000 OQ Coverage Add-On

SV-161-1017 NextSeq® 550 OQ Coverage Add-On

20003924 Workflow Design and Evaluation Service for MiniSeq™ System

20004136 MiniSeq Operational Qualification

20004137 MiniSeq OQ Coverage Add-On

20004138 MiniSeq Installation and Operational Qualification

20004139 Illumina Product Care MiniSeq System Health Check

20004140 Illumina Product Care MiniSeq Preventative Maintenance

20004545 MiniSeq Performance Qualification

20005893 cBot 2 Operational Qualification

20016091 Workflow Design and Evaluation Service for NovaSeq™ System

20016098 NovaSeq® 6000 Operational Qualification

20016099 NovaSeq® 6000 OQ Coverage Add-On

20016100 NovaSeq® 6000 Installation and Operational Qualification

20016101 Illumina® Product Care NovaSeq® 6000 System Health Check

20016102 Illumina® Product Care NovaSeq® 6000 Preventative Maintenance

20016332 NovaSeq® 6000 Performance Qualification

SP-503-1002 MiSeqDx™ Operational Qualification

SP-101-1002 cBot™ Operational Qualification

SP-301-1002 iScan® Operational Qualification

SP-102-2502 HiSeq® 2500 Operational Qualification

SP-102-2003 HiSeq® 2000 PQ

SP-102-2002 HiSeq® 2000 Operational Qualification

SP-102-1502 HiSeq® 1500 Operational Qualification

SP-102-1501 HiSeq® 1500 Installation Qualification

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

SP-801-1001 HiSeq Proof of Concept

20040651 NextSeq 1000 Installation & Operational Qualification

20132556 MiSeq i100 Plus Operational Qualification Coverage Add-On

20036749 iSeq 100 System Health Check

20038659 NextSeq Control SW v4 / Win 10 no contract

20047227 NovaSeq 6000Dx-CN Performance Qualification

20047226 NovaSeq 6000Dx-CN Installation and Operational Qualification

20040245 DRAGEN System Health Check

20047225 NovaSeq 6000Dx-CN Operational Qualification

20047224 NovaSeq 6000Dx-CN Operational Qualification Coverage Add- On

20047223 NovaSeq6000Dx-CN System Health Check

20047222 NovaSeq 6000Dx-CN Preventative Maintenance

20089639 iScanDx Operational Qualification

20089638 iScanDx Operational Qualification Coverage Add-On

20089637 iScanDx System Health Check

20089636 iScanDx Preventative Maintenance

20086761 NovaSeq X Plus Performance Qualification

20086760 NovaSeq X Plus Installation and Operational Qualification

20086759 NovaSeq X Plus Operational Qualification

20086758 NovaSeq X Plus Operational Qualification Coverage Add-On

20086757 NovaSeq X Plus System Health Check

20086756 NovaSeq X Plus Preventative Maintenance

20086745 NovaSeq X Performance Qualification

20086744 NovaSeq X Installation and Operational Qualification

20086743 NovaSeq X Operational Qualification

20086742 NovaSeq X Operational Qualification Coverage Add-On

20023558 NextSeq 550 Dx Operational Qualification Coverage AddOn

20023559 NextSeq 550 Dx Installation and Operational Qualification

20040676 Illumina Product Care NextSeq 2000 System Health Check

20040677 Illumina Product Care NextSeq 2000 Preventive Maintenance

20086740 NovaSeq X Preventative Maintenance

20023610 NextSeq 550 Dx Operational Qualification

20023611 iSeq 100 Installation and Operational Qualification

20086741 NovaSeq X System Health Check

20040652 NextSeq 1000 Operational Qualification

Catalog # Product Description List Price

(USD)

Customer Price

(USD)

20023928 iSeq 100 Spare Air Filter

20041831 NextSeq 2000, KIT, IM FILTER