Attachment 01 - Statement of Work.pdf
PDF 133 KB Posted
- Attached to
- Genomic Sequencing - Stillwater, OK Federal contract opportunity
- Solicitation number
- 1232SA25Q0054
About this file
This Statement of Work (SOW) details genomic sequencing services for the USDA Agricultural Research Service's Peanut Specialty Genetics Research Unit (PSGRU) in Stillwater, OK. The contract requires a service provider to perform whole genome sequencing of peanut seed samples using the Khufu Genomic Analysis Software, with specific technical tasks including DNA extraction, quantification, trait determination, and data interpretation. Key deliverables include genotyping services with results in hapmap format and QTL-seq services providing reports on significant genetic loci.
The project scope allows for variable sample processing per year, with PSGRU providing seed chip samples and the contractor responsible for analyzing genomic data to support peanut genetics research. The primary objective is to enable rapid selection of desirable peanut traits and determine recurrent parent background, potentially reducing field testing resources during early breeding line development. The contract specifies no travel requirements, no security restrictions, and establishes that all data will be owned by USDA ARS, with Dr. Josh Clevenger from Hudson Alpha Institute for Biotechnology identified as the key personnel.
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Statement of Work (SOW)
Project: Genomic Sequencing with Khufu Genomic Analysis Software
GENERAL INFORMATION
1.0 Scope of Work: PSGRU requires a service provider for the sequencing of DNA from biological samples to support research activities in peanut genetics. These services are required on request only. The number of samples processed per year will vary.
2.0 Background: The Khufu platform provides whole genome sequencing at low coverage along with data analysis that enables the PSGRU to rapidly select for traits of interest in peanut and determination of percent recurrent parent background, saving resources that would otherwise be expended testing for performance in the field at early generations of breeding line development.
CONTRACTOR REQUIREMENTS
3.0 Technical Requirements/Tasks:
1. DNA extraction and quantification from chips of peanut seeds.
2. WGS via Khufu platform.
3. Determination of what traits are present (i.e., disease resistance, high oleic, etc.)
4. Percent recurrent parent background.
5. Data interpretation and consultation.
4.0 Government Furnished: The PSGRU will provide peanut samples in the form of seed chips.
5.0 Deliverables / Schedule: The delivery schedule will vary depending on submission of samples by PSGRU. The service provider must be able to provide PSGRU with the following services, among others:
o For Genotyping Services, the results are in hapmap format.
o For QTL-seq Services, the results will be provided in a report of the analyzed dataset for significant genetic loci.
6.0 Travel: None
7.0 Contractor’s Key Personnel: Dr. Josh Clevenger, Hudson Alpha Institute for
Biotechnology Faculty Investigator
8.0 Security Requirements: None
9.0 Data Rights: Data will be owned by USDA ARS
10.0 Section 508 – Electronic and Information Technology Standards: None
| CONTRACTOR REQUIREMENTS |
| 3.0 Technical Requirements/Tasks: |
| 6.0 Travel: None |
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