Attachment H - Laboratory Tests Equipment_FINAL~1.docx

DOCX document 52 KB Posted

Attached to
Laboratory Information Management System RFP
Solicitation number
24-448DOIT-APP44-B-38919
Issued by
St. Clair County, Illinois

About this file

This is an attachment to a Laboratory Information Management System RFP from the Illinois Department of Innovation and Technology and Department of Public Health, detailing required laboratory tests and equipment specifications. The document outlines comprehensive testing capabilities required for the new LIMS solution, including 66 clinical laboratory tests, 13 environmental laboratory tests, and 17 newborn screening laboratory tests. The clinical tests cover a wide range of analyses including viral, bacterial, and genetic testing, while environmental tests focus on food safety, water quality, and toxin detection.

The equipment specifications list details 57 different laboratory instruments from various manufacturers that must interface with the LIMS solution. Many of these instruments require bi-directional or uni-directional interfaces, supporting formats such as XML, PDF, and CSV. Key equipment includes mass spectrometers, PCR systems, genetic analyzers, and various automated testing platforms from manufacturers such as Abbott, Illumina, PerkinElmer, and ThermoScientific. This document serves as a technical specification for vendors to understand the scope of laboratory testing capabilities and equipment integration requirements for the LIMS modernization project, which will replace the current STARLIMS and paper-based systems.

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Other files

File Type Posted
Offer to the State of Illinois - Information and Technology v.25.2 9.5.24.pdf PDF
Vendor Questions & Answers 12_3_2024 - B-38919 LIMS RFP .docx DOCX document
Vendor Solution Demonstration Use Cases LIMS VF.docx DOCX document
c2d-vendor-answer-sheet-v.24.4.docx DOCX document
Attachment A - HIPAA Business Associate Agreement_FINAL.docx DOCX document
Attachment B - State Standard Security Requirements_FINAL.docx DOCX document
Attachment D - Glossary_FINAL.docx DOCX document
Attachment G - Traceability Matrix_FINAL 9-4.xlsx XLSX spreadsheet
Attachment C - Commitment to Diversity_FINAL.pdf PDF
Attachment E - Reference Questionnaire_FINAL.docx DOCX document
Attachment F - Price Workbook_FINAL.xlsx XLSX spreadsheet
B-38919 - LIMS RFP - Pre-Submission conference Sign-In Sheets.pdf PDF
Commitment to Diversity Vendor Guidance.zip ZIP file
Deliverable 1.1. Pre-Submission Conference Agenda_Oct_24_24 ~ LAA 10222024 ~ CB 10222024 ~ LAA 10232024.pptx PPTX presentation
IDPH Laboratory Information Management System RFP_FINAL revised (002).docx DOCX document
vendor-disclosure-(formerly-forms-a)-v.24.1 (4)~1.docx DOCX document
Attachment H - Laboratory Tests Equipment_FINAL.docx DOCX document
Attachment H - Laboratory Tests Equipment_FINAL~1.docx DOCX document
BEP U-Plan V25.1.pdf PDF
ipg-active-registered-vendor-disclosure-(formerly-forms-b)-v.23.1 (2)~2.docx DOCX document
Attachment F - Price Workbook_FINAL.xlsx XLSX spreadsheet
BEP U-Plan V25.1.pdf PDF
Vendor Questions & Answers 12_3_2024 - B-38919 LIMS RFP .docx DOCX document
Attachment B - State Standard Security Requirements_FINAL.docx DOCX document
Attachment D - Glossary_FINAL.docx DOCX document
Attachment E - Reference Questionnaire_FINAL.docx DOCX document
Attachment G - Traceability Matrix_FINAL 9-4.xlsx XLSX spreadsheet
Commitment to Diversity Vendor Guidance.zip ZIP file
Offer to the State of Illinois - Information and Technology v.25.2 9.5.24.pdf PDF
c2d-vendor-answer-sheet-v.24.4.docx DOCX document
Attachment A - HIPAA Business Associate Agreement_FINAL.docx DOCX document
B-38919 - LIMS RFP - Pre-Submission conference Sign-In Sheets.pdf PDF
Attachment C - Commitment to Diversity_FINAL.pdf PDF
Attachment H - Laboratory Tests Equipment_FINAL.docx DOCX document
IDPH Laboratory Information Management System RFP_FINAL~1.docx DOCX document
ipg-active-registered-vendor-disclosure-(formerly-forms-b)-v.23.1 (2)~2.docx DOCX document
vendor-disclosure-(formerly-forms-a)-v.24.1 (4)~1.docx DOCX document
Deliverable 1.1. Pre-Submission Conference Agenda_Oct_24_24 ~ LAA 10222024 ~ CB 10222024 ~ LAA 10232024.pptx PPTX presentation
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STATE OF ILLINOIS

Department of Innovation and Technology Department of Public Health Request for Proposal Laboratory Information Management System RFP

24-448DOIT-APP44-B-38919

Attachment H – Laboratory Tests & Equipment Clinical Laboratory Tests Below is a list of all current clinical tests the Solution shall be able to perform.

Table 1: Clinical Tests

#
Clinical Laboratory Test Name
CT-1
Adenovirus (RP2 Panel)
CT-2
Bacillus anthracis (Anthrax)
CT-3
Bordetella pertussis (whooping cough; molecular)
CT-4
Brucella spp. (Brucellosis)
CT-5
Burkholderia pseudomallei (Melioidosis)
CT-6
Burkholderia mallei (Glanders)
CT-7
California Encephalitis virus
CT-8
Carbapenem-Resistant Enterobacteriaceae & CRPA (Molecular), CIM Sensitivity
CT-9
Chikungunya Virus (molecular)
CT-10
Chikungunya Virus (serology)
CT-11
Chlamyda pneumoniae (RP2 Panel)
CT-12
Chlamydia trachomatis (molecular screen)
CT-13
Coronavirus 229E, HKU1, NL63, OC43 (RP2 Panel)
CT-14
Coxiella burnetii (Q fever)
CT-15
Dengue virus (molecular)
CT-16
Dengue virus (serology)
CT-17
Ebola Virus
CT-18
Escherichia coli (shiga toxin producers, enteric pathogen)
CT-19
Franciscella tularensis (Tularemia)
CT-20
Haemophilus influenza
CT-21
Human Immunodeficiency virus, types 1 and 2 (antibody screen) - Serum
CT-22
Influenza virus, Molecular
CT-23
Influenza A (RP2 Panel)
CT-24
Influenza A H1 (RP2 Panel)
CT-25
Influenza A H1-2009 (RP2 Panel)
CT-26
Influenza A H3 (RP2 Panel)
CT-27
Influenza B (RP2 Panel)
CT-28
Lead (blood)
CT-29
Legionella (culture)
CT-30
Legionella (molecular)
CT-31
Listeria monocytogenes
CT-32
Measles virus (Rubeola; molecular)
CT-33
Metapneumovirus, Human (RP2 Panel)
CT-34
Monkey Pox Virus
CT-35
Mumps virus (molecular)
CT-36
Mycobacterium tuberculosis, acid fast bacilli smear analysis (Microscope)
CT-37
Mycobacterium tuberculosis, Primary Clinical Specimens
CT-38
Mycobacterium tuberculosis, Culture Confirmation
CT-39
Mycobacterium tuberculosis, drug susceptibility in culture
CT-40
Mycobacterium tuberculosis, strain genotyping (send outs only)
CT-41
Mycoplasma pneumoniae (RP2 Panel)
CT-42
Neisseria gonorrhoeae (culture) AST
CT-43
Neisseria gonorrhoeae (molecular screen)
CT-44
Neisseria meningitidis
CT-45
Norovirus, G1 and G2 (molecular)
CT-46
Orthopox screen, non-variola (molecular)
CT-47
Parainfluenza 1 (RP2 Panel)
CT-48
Parainfluenza 2 (RP2 Panel)
CT-49
Parainfluenza 3 (RP2 Panel)
CT-50
Parainfluenza 4 (RP2 Panel)
CT-51
Plasmodium spp. (malaria)
CT-52
Rabies virus (animal test only)
CT-53
Respiratory Syncytial Virus A (RP2 Panel) GenMark
CT-54
Respiratory Syncytial Virus B (RP2 Panel)
CT-55
Rhinovirus/Enterovirus (RP2 Panel)
CT-56
Salmonella spp. (enteric pathogen)
CT-57
SARS-COV-2 (molecular PCR)
CT-58
SARS COV-2 (RP2 Panel)
CT-59
Shigella spp. (enteric pathogen)
CT-60
Treponema pallidum (syphilis)
CT-61
Varicella-zoster virus (chicken pox; molecular)
CT-62
Variola Virus (Smallpox; molecular)
CT-63
Vibrio spp. (enteric pathogen)
CT-64
Yersinia pestis (Plague)
CT-65
Yersinia spp. (enteric pathogen)
CT-66
Zika Virus (serology)

Environmental Laboratory Tests Below is a list of all current environmental tests the Solution shall be able to perform.

Table 2: Environmental Tests

#
Environmental Laboratory Test Name
ET-1
Aerobic and Coliform Count in Dairy using Petri-film
ET-2
Alkaline Phosphatase in Dairy Samples
ET-3
Coliform (Total and E. coli) in Water - Colilert
ET-4
E. coli O157:H7 in Food or Env Swabs/Sponges
ET-5
Environmental Lead
ET-6
Inhibitory Substances in Dairy Samples - Charm
ET-7
Inhibitory Substances in Dairy Samples - Delvotest
ET-8
Legionella (Legilert)
ET-9
Listeria species in Food and Env Swabs/Sponges
ET-10
Residual Bacterial Count in Milk Containers
ET-11
Ricin Toxin
ET-12
Salmonella in Food and Env Swabs/Sponges
ET-13
Total Coliform and E. coli in Dairy Water -MTF method

Newborn Screening Laboratory Tests Below is a list of all current newborn screening tests the Solution shall be able to perform.

Table 3: Newborn Screening Tests

#
Newborn Screening Laboratory Test Name
NT-1
MS/MS Metabolic
NT-2
LSD (Lysosomal Storage Disorders)
NT-3
Psychosine (2nd tier test for Krabbe LSD)
NT-4
30kbdel (3rd tier test for Krabbe LSD)
NT-5
ALD (Adrenoleukodystrophy)
NT-6
Sickle Cell Hemoglobinopathy
NT-7
Biotinidase
NT-8
CAH (17α-OH-progesterone, Congenital Adrenal Hyperplasia)
NT-9
T4 (Thyroxine)
NT-10
TSH (Thyroid Stimulating Hormone)
NT-11
IRT (Immunoreactive Trypsinogen)
NT-12
CFTR (Cystic Fibrosis Transmembrane Conductance Regulator, 2nd tier test for IRT)
NT-13
Galactosemia (Interpretation requires TGAL and GALT result)
NT-14
TGAL (Total Galactose)
NT-15
GALT (Glactose-1-Phosphate uridyl transferase)
NT-16
SCID (Severe Combined Immunodeficiency)
NT-17
SMA (Spinal Muscular Atrophy)

Laboratory Equipment List The below list includes all current laboratory equipment the Solution shall interface with.

Table 4: Laboratory Equipment List

Manufacturer
Model Number

Description Name

Quantity
Desired Interface Capability

Neogen

Petrifilm Plate Reader

3
NA
Abbott
ARHITECT i1000SR
1
Bi-Directional ATSM
Agena Bioscience
MassArray MA 4.2-CFTR mutation analyzer
2
Bi-Directional
Agilent
5977C/8890GC-MS System
2
Bi-Directional
Becton Dickinson
Phoenix AP
1
Uni-Directional XML or PDF
Becton Dickinson
Phoenix M50
2
Uni-Directional XML or PDF

Bio Merieux

Vidas

1
NA
Bio-Rad
DP6K012103-Geenius Reader
1
NA
Bio-Rad
CFX384 -q-PCR thermocyclers for SCID/SMA
4
NA
Bio-Rad
C1000
2
NA
BioFire
Film Array 2.0
6
Uni-Directional XML
Brady
BBP12-Label Printer
10
Uni-Directional
Brady
BP-I7100-Label Printer
15
Uni-Directional
Bruker
Maldi Biotyper sirius CA
2
Uni-Directional

Cepheid

GeneXpert 16 -moduleTB sensitivity Instrument

1
Uni-Directional
Cepheid
GeneXpert System-89813
1
Uni-Directional
Charm Science
Novalum 2
3
NA
Clear Labs, Inc
Clear DX sequencer/workstation
4
Uni-Directional
Eppendorf
EP Motion 5075
10
NA
Fisher Scientific
ICAP7600 DUO
1
Bi-Directional
Fisher Scientific
ICAP 7600 OES
1
Bi-Directional

Illumina

MiSeq DX

2
Uni-Directional
Illumina
ISeq
1
Uni-Directional
Illumina
NextSeq 2000/Model NextSeq2001
5
Uni-Directional
Hologic
Panther
1
Bi-Directional
Life Technologies
7500Fast DX
18
Uni-Directional XML
Life Technologies
2720 GeneAMP PCR System
4
NA
Life Technologies
7500 Fast
2
Uni-Directional XML
Life Technologies
9700-96 Well Sample Module
1
NA
Life Technologies
Veriti Thermal Cycler-96 well TFS
11
NA
Life Technologies
Quantstudio DX
7
Uni-Directional
Life Technologies
Quantstudio 5
1
Uni-Directional
Life Technologies
MiniAmp Plus
1
NA
Life Technologies
SIMPLIAMP
1
NA
MGIT
960 Bacterial ID
2
NA
MGIT
320 Bacterial ID
1
NA
Perkin Elmer
Victor Nivo/HH3500
3
NA
Perkin Elmer
NexION 2000 ICPMS for Blood Lead
1
Bi-Directional
PerkinElmer
Wallac DBS Puncher-Dried Blood Spot puncher
9
Uni-Directional
PerkinElmer
Clarus 690 GC/Clarus SQ 8T MS
2
Bi-Directional
PerkinElmer
Panthera-Puncher Model 20849-Dried Blood Spot multi-puncher
2
Uni-Directional
PerkinElmer
GSP-2021-0010

Genetic Screening Processor for CAH, T4, TSH, IRT, TGAL & GALT

5
Bi-Directional
Revvity
QSight 225

Mass Spectrometer for LSD and MS/MS metabolic screening

9
Bi-Directional
PerkinElmer
QSight 210

ALD Mass Spectrometer

2
Bi-Directional
Qiagen
EZ1XL
1
NA
Qiagen
Qiacube
2
NA
Roche Diagnostics
MagnaPure 96
2
NA
Roche Diagnostics
MagnaPure 24
5
NA
Roche Diagnosticss
GenMark ePlex System
3
NA
Sciexx
QTRAP 6500+LC-MSMS
1
Bi-Directional
Seal Analytical
DEENA II
1
NA
Seal Analytical
DEENA II 020184
1
NA

Skylar

BluVision Discrete Analyzer

1
NA
ThermoScientific
ICP-MS/iCAP RQ00383
1
Uni-Directional XML and CSV
ThermoScientific
KingFisher Flex
3
NA
ThermoScientific
KingFisher Apex
3
NA
Trinity Biotech
GeneSys Ultra 2-HPLC screening system
6
Bi-Directional

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