Appendix_D_-_Introduction_to_NIMS.ppt
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- FDA Nonclinical Information Management System (NIMS) Federal contract opportunity
- Solicitation number
- FDA-SOL-13-1116203
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Appendix D
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Introduction to NIMS A Computational Science Center (CSC) Course Offering
Agenda 1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
Introduction Please write questions on index cards; you will have the opportunity to ask questions at the end.
Please complete the electronic evaluation you will receive after the class – we need your feedback!
Introduction > NIMS Training Curriculum
This diagram shows the major components of the NIMS training and introduction at FDA that helps reviewers learn to use the tool effectively.
This is the introduction course, which includes a reference card and question and answer session at the end. After completing this course, reviewers have access to the NIMS tool, which has the online module, a user guide, quick reference guide, use cases, and FAQ housed within the tool for your convenience. User Support is also available as soon as the reviewer has access to the tool and is ready to begin using NIMS.
Introduction > Learning Objectives By the end of this class each participant will
1. Understand how NIMS fits into CDER regulatory review strategy
2. Understand how NIMS will save you time and provide dynamic visualization and analytic capabilities for review
3. Understand how to access and navigate through the online training module and other training materials when you need them
4. Understand what kinds of user support are available for NIMS and how to access them
These learning objectives state what you should expect to get out of this introduction course.
CDER vision Put the relevant information at the fingertips of the reviewers for analysis & decision making.
| Ensure that useful, publicly available data standards exist |
| Ensure that regulatory data are submitted according to those standards |
| Ensure that regulatory review processes can fully leverage the standardized data |
| Tools |
| Processes |
| Support/Training |
CSC-OND Collaboration on NIMS
| NIMS has been developed with reviewers in mind. |
| This is NIMS 1.0; CSC needs and wants user feedback on how to make it better, new features, different configuration. |
PDUFA Implementation
| Standardized, electronic data will become required. |
| First for general toxicology and carcinogenicity |
| NIMS is the review tool for the data tabulations and some summary data. |
Summary Methods Interpretation Data tabulations
Data tabulations SEND xpt Summary Methods Interpretation
1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
NIMS can save you time and help you do an effective review by providing you data in a standard but dynamic way.
… Here’s how:
Instructor will provide a live demonstration of the NIMS tool to the class at this time.
Study Activities view
The Study Activities View provides a high-level view of the key activities and events on the timeline of the study in Gantt format.
Study Activities view
This shows Study Activities View drilled down to individual subject level.
Trial summary in reviewer template
The data from the Trial Summary section and other domains are exported into pre-defined FDA specified Reviewer Template.
z-transform box-plots for laboratory results
Z-transform view allows users to review all clinical pathology findings in a single view.
Histopathology findings with incidences drilled down to subjects
The Consolidated Incidence View for histopathology findings displays incidence counts for observations across treatment groups, tissues and study days. It allows users to drill down to individual subjects that contributed to the incidence count.
Export histopathology data to reviewer template
The incidence data from histopathology findings can be exported to standard reviewer template format.
Group summary
The means that standard deviation and percent difference when compared to the reference group across treatment groups and days are displayed in the Group Summary view for each parameter.
Individual Subject Profile
Individual Subject profile consolidates all the findings for the selected subject across data domains in a single view.
Charting capabilities
ToxVision allows users to view study data in various graphical representations from the Group Summary and Individual Results tabs.
Data export capabilities
ToxVision allows users to export study data into various formats like Excel, CSV, Word, XPT,XML and Prism from the Menu option on all views.
Combining groups for analysis
ToxVision allows users to select two or more groups or sets from Trial Sets domain and combine them into a single virtual group for analysis.
Combining groups for analysis: Results
Setting reference / baseline groups
Users can set the baseline for any available group to perform intergroup comparison.
Exclude /include subjects from analysis: Results
The group summary (Means and Standard Deviation) can be recalculated by excluding an outlier for a subject within a treatment group.
1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
Online training module The Online Training Module teaches you how to perform review tasks in NIMS.
It can demonstrate lessons for you You move through at your own pace
The online training module covers:
| About NIMS and Using the Interactive Module |
| Section 1: Accessing NIMS and Study Data |
| Lesson 1: Login to NIMS |
| Lesson 2: Adding a study to My Workspace |
| Lesson 3: Study Activities View |
| Lesson 4: Adding study metadata |
| Section 2: ToxVision Setup |
| Lesson 1: Viewing a study in ToxVision |
| Lesson 2: Study data organization |
| Lesson 3: Viewing data for a selected data category |
| Lesson 4: View Group Summary Data for Body Weight |
| Lesson 5: View Individual Results for Electrocardiogram Test Results |
| Lesson 6: View Individual Details for Organ Measurements |
| Lesson 7: Subject Profile View |
| Lesson 8: Viewing group incidences for Clinical Observations |
| Lesson 9: Generating charts for Laboratory Test Results |
| Lesson 10: Exporting study data from Body Weight Gain |
[Continued]
| Section 3: Basic Reviewer Exercises |
| Lesson 1: Generating the Reviewer Template |
| Lesson 2: Working with Reviewer Panels |
| Lesson 3: Generating a z-transform box plot |
| Lesson 4: Consolidated Incidence View for treatment groups |
| Lesson 5: Export histopathology data to reviewer template |
| Lesson 6: View Individual Results for gross pathology data |
| Lesson 7: Tissue View |
| Lesson 8: Setting a treatment group as a baseline(reference group) |
| Lesson 9: Combine groups to create a new reviewer group |
| Lesson 10: Exclude subjects and recalculate group summary |
| Section 4: Basic Search |
| Lesson 1: Unstructured search |
| Lesson 2: Structured search with Clinical Pathology |
Online training module > Sample Lessons
Live Demo
Lesson: Study Activities View
The instructor will provide a live demonstration of navigating through two tasks in the NIMS tool.
1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
Training & Support CSC NIMS Training Website:
http://inside.fda.gov:9003/ProgramsInitiatives/Drugs/ComputationalScienceCenter/ucm330339.htm
This diagram shows the training materials and support available to reviewers both within the NIMS training curriculum and as extra help as needed.
Training & Support within the tool
NIMS User Support
| Service | Availability | Email or Web URL | Source |
| CSC NIMS Website | Any time | http://inside.fda.gov:9003/ProgramsInitiatives/Drugs/ComputationalScienceCenter/ucm330337.htm | CSC |
| NIMS Help | Any time | CDER-NIMS-Help@fda.hhs.gov | OBI |
| Training Information | Any time | http://inside.fda.gov:9003/ProgramsInitiatives/Drugs/ComputationalScienceCenter/ucm330339.htm | CSC Training Website |
This chart shows the NIMS support services (email addresses or websites with extra resources) that are available to reviewers at any time.
1.) Introduction 2.) What you can do with NIMS 3.) Online training module 4.) Training & support 5.) Next steps
Next steps > Access to NIMS
You will receive an email with login information and the NIMS shortcut after the training.
Next steps > Your Feedback The CSC is dedicated to making NIMS as valuable to you as possible. We need your feedback to reach that objective.
Contact the CSC with any ideas or suggestions you have: CDERCSC@fda.hhs.gov We will be reaching out to users for a focused evaluation in the future.
Next steps > Course Evaluation You will receive a link to an electronic evaluation of this course within the next two weeks.
We appreciate you completing the evaluation to help us make improvements.
The electronic evaluation should only take a few minutes to complete. Your feedback is valuable to the CSC.
The CSC Training Development Team would like to thank everyone who helped us shape this course
| Lauren Murphree Mihalcik |
| Bob Dorsam |
| Chris Toscano |
| Elizabeth Hausner |
| Carol Rivera-Lopez |
| Matthew Whittaker |
| Eric Andreasen |
| George Chang |
| Paul Brown |
| Point Cross Life Sciences, Inc. |
| DRT Strategies, Inc. |
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