DNA testing services

Closed Special Notice Posted

Solicitation number
1109291
Agency
Animal and Plant Health Inspection Service Department of Agriculture
Responses due
Set-aside
No set-aside

Opportunity facts

NAICS code
541380 Testing Laboratories and Services
PSC
B516 Special Studies/Analysis- Animal/Fisheries
Place of performance
Fort Collins, Colorado 80521, United States

Notice details come from SAM.gov. Updated .

About this opportunity

The United States Department of Agriculture (USDA) requires genotyping services for 2544 porcine samples collected for the National Feral Swine Genetic Archive. The contractor must be capable of laboratory and genetic analyses to generate high density SNP genotypes using GeneSeek’s Genomic Profiler of Porcine (GGP) 80k high-density SNP array, and return data within 6 weeks of sample submission. The genotyping will be completed within a 365-day period, with samples submitted intermittently.

List of products and services to be provided:

  1. Genotyping of 2544 porcine samples.
  2. Laboratory and genetic analyses to generate high density SNP genotypes.
  3. Use of GeneSeek’s Genomic Profiler of Porcine (GGP) 80k high-density SNP array.
  4. Timely return of data (within 6 weeks of sample submission).
  5. Completion of genotyping within a 365-day period.

Notice text

We are requesting High-density Single Nucleotide Polymorphism genotyping services for feral swine. GeneSeek, a Neogen Company, is the leader in the field of agricultural and animal sciences genomics. Their large market share allows them to provide full-service genotyping (acceptance of genetic samples, DNA extraction, genotype quantification, and delivery of data) at a substantial (53%) discount over the price their competitors (Illumina) offer for only materials (SNP BeadChips). Further, GeneSeek has become the industry standard for genotyping. Accordingly, they have been contracted by collaborative agencies within USDA (Agricultural Research Services) to meet ARS genotyping needs. For these reasons, GeneSeek was awarded genotyping contracts in Fiscal Years 2016 – 2022 in which NWRC scientists collectively genotyped over 21,500 feral swine using GeneSeek’s proprietary genotyping bead array. In order to continue building a seamless, long-term dataset and maximize the scientific return on financial investment, it is necessary to continue contracting with GeneSeek for our genotyping needs. More directly, if we were to use a different tool for data generation (either an alternative SNP array or whole genome sequencing), the data would not be directly comparable to the database of 21,500 we have developed over the past 7 years, which would greatly reduce the utility of new data (if generated with a different analysis approach) in meeting the mission of USDA. Further, through 7 years of contracting, GeneSeek has continued to provide an effective product (in highresolution genetic analysis) and excellent customer service, and, in doing so, have become a trusted partner in fulfilling our mission within Wildlife Service and USDA

Attachments

Files attached to this notice, newest first
File Type Posted
GeneSeek_JOFOC - Sole Source_FY23.doc DOC document
GeneSeek_SOW_FY23.docx DOCX document

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