ATTACHMENT_1_DNA_SEQUENCING_DATA_SPECIFICATIONS.doc

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DNA SEQUENCING SYSTEM Federal contract opportunity
Solicitation number
NIHOD2014010
Issued by
Department of Health and Human Services National Institutes of Health

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ATTACHMENT_1_DNA_SEQUENCING_DATA_SPECIFICATIONS

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ATTACHMENT 1 - System Performance Parameters High Output Run Mode*

SBS v4 SPECIFICATIONS

Read length
Dual Flow Cell
Single Flow Cell
Dual Flow Cell Run Time
1×36
128-144 Gb
64-72 Gb
29 hrs
2×50
360-400 Gb
180-200 Gb
2.5 days
2×100
720-800 Gb
360-400 Gb
5 days
2×125
900-1 Tb
450-500 Gb
6 days
Reads Passing Filter
Up to 4 billion single read or 8 billion paired-end reads
Up to 2 billion single read or 4 billion paired-end reads
Quality
Greater than 85% of bases above Q30 at 2×50 bp

Greater than 80% of bases above Q30 at 2×100 bp Greater than 80% of bases above Q30 at 2×125 bp

SBS v3

Dual Flow Cell
Single Flow Cell
Dual Flow Cell Run Time
95-105 Gb
47-52 Gb
2 days
270-300 Gb
135-150 Gb
5.5 days
540-600 Gb
270-300 Gb
11 days
N/A
N/A
N/A
Up to 3 billion single read or 6 billion paired-end reads
Up to 1.5 billion single read or 3 billion paired-end reads

Greater than 85% of bases above Q30 at 2×50 bp

* Install specifications comparable to Illumina PhiX control library at supported cluster densities (between 610-678 K clusters/mm2 passing filter using TruSeq v3 Kits or 950-1050 K clusters/mm2 passing filter using HiSeq v4). Run times for high output mode correspond to the sequencing process, only. Performance may vary based on sample quality, cluster density, and other experimental factors.

Rapid Run Mode*

Read length
Dual Flow Cell
Single Flow Cell
Dual Flow Cell Run Time
1×36
18-22 Gb
9-11 Gb
7 hr
2×50
50-60 Gb
25-30 Gb
16 hr
2×100
100-120 Gb
50-60 Gb
27 hr
2×150
150-180 Gb
75-90 Gb
40 hr
Reads Passing Filter
Up to 600 million single read or 1.2 billion paired-end reads
Up to 300 million single read or 600 million paired-end reads
Quality
Greater than 85% of bases above Q30 at 2×50 bp

Greater than 75% of bases above Q30 at 2×150 bp

*Install specifications comparable to Illumina PhiX control library at supported cluster densities (between 700-820 K clusters/mm2 passing filter using TruSeq Rapid Kits). Run times for rapid run mode correspond to on-board cluster generation (1.5 hr) and sequencing. Performance may vary based on sample quality, cluster density, and other experimental factors.

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