Attachment 1 Specs and Salient Characteristics.docx

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Nanostring nCounter Sprint Profiler Federal contract opportunity
Solicitation number
12305B22Q0109
Issued by
Department of Agriculture Agricultural Research Service Field Research Implementation and Information Delivery Northeast Area

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PRODUCT SPECIFICATION

TITLE: nanoString nCounter SPRINT Profiler nanoString Relevant Characteristics nanoString is a novel technology for spatial profiling biology. This platform offers a unique capability to multiplexed (up to 800 genes) spatial profiling of RNA, DNA, and cell lysate from diverse sample types, including challenging Formalin-Fixed, Paraffin-Embedded (FFPE) tissue. Importantly, this technology is optimized to obtained same quality of data regardless of whether the sample processing is from freshly collected tissue or from previously fixed samples.

The nCounter SPRINT Profiler employs a novel digital barcode technology. These barcodes hybridize with target molecules, and unique digital barcodes are then directly counted using a single-molecule imaging to yield precise and sensitive quantification. Up to 800 targets can be measured simultaneously in a single sample, and up to 12 samples can be assayed in a single run.

The following nCounter® applications are supported:

-Vantage™ DNA, RNA (fusion) and Protein panels -Gene expression (mRNA) -MicroRNA (miRNA) -DNA copy number variation (CNV) -Long non-coding RNA (lncRNA) -DNA enriched by chromatin-immunoprecipitation (ChIP-String).

Key Features and Benefits

Feature
Benefit

Pre-designed Assays

No time wasted with assay optimization.

Automation
Accuracy and reproducibility for greater confidence in results.

Enzyme-free Chemistry

Success using degraded samples (e.g., FFPE tissues).

Digital Counting
Quantifiable data output for easier, more reliable analysis.

Single-tube Assay of up to 800 Targets

Better view of whole pathways or gene signatures and the ability to include additional housekeeping genes without extra effort.

Crude Cell Lysate Sample Input

Eliminate cost and time associated with nucleic acid extraction.

Minimal Hands-on Time

Fewer human resources required.

Platform Performance Specifications

Description
Specification
Level of Target Multiplexing
Up to 800 targets
Recommended Amount of Starting Material
RNA: 25 ng if > 400 target plex 50 ng if < 400 target plex

DNA: 150 ng RNA:Protein: 200–2,500 cell equivalent lysates

Sample Types Supported
Total RNA, cell lysates in GITC, total RNA derived from FFPE tissues, and PAXgene™-lysed whole blood
Reaction Volume
Up to 35 μL
Limit of Detection
15 zeptomole spike-in control
Fold Change Sensitivity
> 1.5-fold (if > 5 copies per cell) > 2-fold (if > 1 copy per cell)
Spike Correlation
R2 ≥ 0.95
Linear Dynamic Range
6 x 105 total counts
Throughput
12 lanes per 6 hours

Hardware Specification

Description
Specification
Operating Temperature
18–28°C
Humidity
30-80%
Pollution Degree
2
Power Source
100–240 VAC, 50–60 Hz
Dimensions
91 x 76 x 53 cm
Weight
81.65

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